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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
3
DNA accessibility
3
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
broad histone mark
1
control
Date released
5
December, 2019
3
August, 2021
2
July, 2019
2
June, 2019
1
October, 2019
Available data
11
bam
10
bigWig
5
bed bed3+
5
bed narrowPeak
5
tsv
3
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
13
Homo sapiens
Biosample type
392
cell line
336
tissue
13
primary cell
8
in vitro differentiated cells
Organ
375
epithelium
319
pancreas
35
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
13
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
13 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
3
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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