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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
4
DNase-seq
Assay category
58
DNA binding
4
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
3
November, 2018
1
June, 2019
Available data
655
bam
598
bigWig
450
fastq
422
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
62
Homo sapiens
Biosample type
58
cell line
3
tissue
1
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
62
AMP
Genome assembly (visualization)
62
hg19
48
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
13
inconsistent control read length
organ_slims!
epithelium
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
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