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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
ChIP-seq
154
total RNA-seq
21
ATAC-seq
4
DNase-seq
3
small RNA-seq
1
WGBS
Assay category
415
DNA binding
157
Transcription
25
DNA accessibility
1
DNA methylation
Target of assay
331
transcription factor
81
recombinant protein
68
histone modification
67
histone
54
RNA binding protein
45
narrow histone mark
22
broad histone mark
22
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
52
November, 2018
36
December, 2017
20
May, 2022
18
August, 2017
14
August, 2021
7
July, 2019
6
October, 2019
5
January, 2019
1
June, 2019
1
March, 2020
Available data
655
bam
598
bigWig
450
fastq
422
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
598
Homo sapiens
Biosample type
332
cell line
265
tissue
1
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
598
AMP
Genome assembly (visualization)
593
hg19
505
GRCh38
Lab
564
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
598 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
cell line
HepG2
326
5
1
tissue
liver
82
147
20
2
1
right lobe of liver
7
2
1
1
2
primary cell
hepatic stellate cell
1
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