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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
218
DNA binding
188
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
95
transcription factor
73
histone modification
72
histone
50
control
46
narrow histone mark
26
broad histone mark
22
RNA binding protein
16
recombinant protein
7
chromatin remodeller
Date released
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
341
bam
330
bigWig
173
bed narrowPeak
169
tsv
135
fastq
94
bigBed narrowPeak
70
tagAlign
8
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
448
Homo sapiens
Biosample type
361
tissue
86
cell line
1
primary cell
Organ
946
pancreas
684
connective tissue
epithelium
491
adipose tissue
476
liver
354
kidney
353
heart
230
vasculature
227
blood vessel
195
brain
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
448
AMP
Genome assembly (visualization)
333
hg19
290
GRCh38
Lab
377
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
month_released!
November, 2017
BIOSAMPLE
ASSAY
448 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
63
14
1
1
2
2
2
1
primary cell
hepatic stellate cell
1
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