Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
175
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
200
DNA binding
179
Transcription
27
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
84
transcription factor
70
histone modification
69
histone
46
control
44
narrow histone mark
25
broad histone mark
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
Date released
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
341
bam
316
bigWig
160
tsv
159
bed narrowPeak
135
fastq
94
bigBed narrowPeak
70
tagAlign
8
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
Organism
417
Homo sapiens
Biosample type
361
tissue
55
cell line
1
primary cell
Organ
942
pancreas
679
connective tissue
epithelium
490
adipose tissue
441
liver
301
heart
224
kidney
224
vasculature
221
blood vessel
195
brain
159
bone element
139
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
417
AMP
Genome assembly (visualization)
318
hg19
290
GRCh38
Lab
377
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
month_released!
November, 2017
August, 2021
BIOSAMPLE
ASSAY
417 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
liver
145
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
45
5
1
1
2
1
primary cell
hepatic stellate cell
1
Download