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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
572
ChIP-seq
190
total RNA-seq
38
DNase-seq
23
ATAC-seq
9
Hi-C
6
RRBS
6
WGBS
5
small RNA-seq
4
pCHi-C
2
STARR-seq
2
single cell RNA-seq
1
snATAC-seq
1
whole genome sequencing assay
Assay category
572
DNA binding
197
Transcription
62
DNA accessibility
12
DNA methylation
9
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
121
histone modification
120
histone
112
control
82
recombinant protein
66
narrow histone mark
56
RNA binding protein
54
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
80
August, 2017
53
November, 2018
48
December, 2017
44
June, 2019
42
May, 2022
31
August, 2021
18
July, 2019
8
March, 2020
7
May, 2019
6
October, 2019
5
January, 2019
3
February, 2020
3
February, 2021
1
December, 2018
1
January, 2018
Available data
712
bam
666
bigWig
482
bed narrowPeak
452
fastq
390
bigBed narrowPeak
178
tsv
108
bed broadPeak
97
tagAlign
95
bigBed broadPeak
42
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
tar
1
bed bed3
1
csv
1
txt
1
vcf
Organism
859
Homo sapiens
Biosample type
443
tissue
401
cell line
15
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
859
AMP
Genome assembly (visualization)
672
hg19
560
GRCh38
Lab
788
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
9
inconsistent ontology term
1
audit script error
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
blood
BIOSAMPLE
ASSAY
859 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
WGBS
small RNA-seq
pCHi-C
STARR-seq
single cell RNA-seq
snATAC-seq
whole genome sequencing assay
tissue
liver
145
167
2
20
1
1
3
1
1
1
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
7
13
1
right lobe of liver
10
3
2
1
1
2
muscle of arm
17
+ See 5 more…
cell line
HepG2
378
14
1
2
1
2
2
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
hepatic stellate cell
1
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