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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
506
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
506
DNA binding
188
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
321
transcription factor
106
control
81
recombinant protein
76
histone modification
75
histone
50
RNA binding protein
47
narrow histone mark
28
broad histone mark
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
294
November, 2017
194
May, 2020
53
August, 2017
48
December, 2017
48
November, 2018
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
628
bam
571
bigWig
423
fastq
397
bed narrowPeak
318
bigBed narrowPeak
169
tsv
71
tagAlign
49
bed broadPeak
49
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
736
Homo sapiens
Biosample type
375
cell line
360
tissue
1
primary cell
Organ
937
pancreas
764
liver
678
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
736
AMP
Genome assembly (visualization)
572
hg19
484
GRCh38
Lab
665
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
736 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
352
14
1
1
2
2
2
1
tissue
liver
144
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
hepatic stellate cell
1
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