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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
533
ChIP-seq
246
total RNA-seq
84
RNA microarray
34
ATAC-seq
5
DNase-seq
5
WGBS
4
pCHi-C
Hi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
533
DNA binding
250
Transcription
39
DNA accessibility
6
DNA methylation
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
153
February, 2021
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
30
August, 2021
8
February, 2023
8
July, 2019
6
October, 2019
5
January, 2019
2
March, 2020
1
February, 2020
1
June, 2019
1
May, 2021
Available data
721
bam
656
bigWig
449
fastq
430
bed narrowPeak
343
bigBed narrowPeak
227
tsv
88
txt
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
5
bed bed3
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
csv
1
vcf
Organism
919
Homo sapiens
Biosample type
518
tissue
399
cell line
2
primary cell
Organ
937
pancreas
787
liver
683
connective tissue
epithelium
491
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
918
AMP
1
T1D
Genome assembly (visualization)
667
hg19
573
GRCh38
Lab
848
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
assay_title!
Hi-C
BIOSAMPLE
ASSAY
919 results
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Clear Filters
ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
10
3
1
2
1
2
acetabular part of hip bone
1
1
+ See 11 more…
cell line
HepG2
378
14
1
1
2
2
1
primary cell
hepatic stellate cell
1
megakaryocyte
1
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