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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ChIP-seq
246
total RNA-seq
84
RNA microarray
34
ATAC-seq
5
DNase-seq
5
WGBS
4
pCHi-C
3
Hi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
427
DNA binding
250
Transcription
39
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
153
February, 2021
53
November, 2018
43
August, 2017
40
May, 2022
36
December, 2017
27
August, 2021
8
February, 2023
8
July, 2019
6
October, 2019
5
January, 2019
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
1
May, 2021
Available data
643
bigWig
622
bam
430
bed narrowPeak
374
fastq
343
bigBed narrowPeak
227
tsv
88
txt
62
bed broadPeak
62
bigBed broadPeak
55
tagAlign
7
bed bed3+
5
bed bed3
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
vcf
Organism
816
Homo sapiens
Biosample type
473
tissue
341
cell line
2
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
815
AMP
1
T1D
Genome assembly (visualization)
655
hg19
572
GRCh38
Lab
748
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
816 results
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ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
102
167
20
2
3
1
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
7
3
1
2
1
2
acetabular part of hip bone
1
1
+ See 11 more…
cell line
HepG2
318
14
1
1
2
2
2
1
primary cell
hepatic stellate cell
1
megakaryocyte
1
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