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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
505
ChIP-seq
184
total RNA-seq
23
ATAC-seq
8
snATAC-seq
5
DNase-seq
5
WGBS
4
pCHi-C
3
Hi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
505
DNA binding
188
Transcription
36
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
387
transcription factor
112
control
89
histone modification
histone
82
recombinant protein
66
RNA binding protein
54
narrow histone mark
34
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
68
November, 2018
43
December, 2017
40
May, 2022
28
August, 2021
28
December, 2018
22
August, 2017
22
January, 2019
8
January, 2021
8
July, 2019
4
March, 2020
3
February, 2021
1
February, 2020
1
January, 2018
1
June, 2019
1
October, 2019
Available data
650
bam
585
bigWig
477
fastq
410
bed narrowPeak
373
bigBed narrowPeak
170
tsv
48
bed broadPeak
48
bigBed broadPeak
27
tagAlign
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
745
Homo sapiens
Biosample type
443
cell line
293
tissue
9
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
737
AMP
8
T1D
Genome assembly (visualization)
586
hg19
506
GRCh38
Lab
669
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
745 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
360
14
1
1
2
2
2
1
GM12878
59
1
tissue
liver
81
167
20
2
3
1
1
1
1
1
right lobe of liver
5
3
1
2
1
2
bladder (urinary bladder)
1
primary cell
peripheral blood mononuclear cell
8
hepatic stellate cell
1
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