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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
599
ChIP-seq
191
total RNA-seq
41
DNase-seq
30
ATAC-seq
7
Hi-C
6
WGBS
4
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
599
DNA binding
195
Transcription
71
DNA accessibility
7
3D chromatin structure
7
DNA methylation
1
DNA sequencing
Target of assay
336
transcription factor
137
histone modification
136
histone
123
control
82
recombinant protein
68
broad histone mark
68
narrow histone mark
56
RNA binding protein
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
75
October, 2019
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
33
June, 2019
31
August, 2021
13
July, 2019
9
February, 2021
7
May, 2019
5
January, 2019
4
February, 2020
4
March, 2020
1
December, 2018
Available data
769
bam
689
bigWig
514
bed narrowPeak
450
fastq
427
bigBed narrowPeak
177
tsv
98
bed broadPeak
98
bigBed broadPeak
82
tagAlign
44
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
886
Homo sapiens
Biosample type
484
tissue
401
cell line
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
886
AMP
Genome assembly (visualization)
695
hg19
603
GRCh38
Lab
815
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
886 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
2
20
1
3
1
1
1
1
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
right lobe of liver
10
3
2
1
1
2
+ See 12 more…
cell line
HepG2
378
14
1
2
1
2
2
1
primary cell
hepatic stellate cell
1
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