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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
4
DNase-seq
Assay category
44
DNA binding
4
DNA accessibility
Target of assay
44
transcription factor
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
44
November, 2017
3
November, 2018
1
June, 2019
Available data
591
bam
531
bigWig
418
fastq
357
bed narrowPeak
320
bigBed narrowPeak
169
tsv
48
bed broadPeak
48
bigBed broadPeak
27
tagAlign
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
48
Homo sapiens
Biosample type
44
cell line
3
tissue
1
primary cell
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
epithelium
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
48
AMP
Genome assembly (visualization)
48
hg19
36
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
2
inconsistent control read length
organ_slims!
epithelium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
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