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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
446
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
446
DNA binding
188
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
43
December, 2017
40
May, 2022
28
August, 2021
22
August, 2017
8
July, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
1
October, 2019
Available data
591
bam
531
bigWig
418
fastq
357
bed narrowPeak
320
bigBed narrowPeak
169
tsv
48
bed broadPeak
48
bigBed broadPeak
27
tagAlign
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
676
Homo sapiens
Biosample type
383
cell line
292
tissue
1
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
676
AMP
Genome assembly (visualization)
532
hg19
453
GRCh38
Lab
608
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
histone
organ_slims!!
epithelium
BIOSAMPLE
ASSAY
676 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
360
14
1
1
2
2
2
1
tissue
liver
81
167
20
2
3
1
1
1
1
1
right lobe of liver
5
3
1
2
1
2
primary cell
hepatic stellate cell
1
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