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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
504
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
504
DNA binding
188
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
309
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
20
chromatin remodeller
2
other context
other post-translational modification
Date released
313
November, 2017
193
May, 2020
54
August, 2017
53
November, 2018
40
May, 2022
31
August, 2021
21
December, 2017
8
July, 2019
6
October, 2019
5
January, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
626
bam
569
bigWig
421
fastq
393
bed narrowPeak
314
bigBed narrowPeak
167
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
731
Homo sapiens
Biosample type
397
cell line
333
tissue
1
primary cell
Organ
945
pancreas
759
liver
679
connective tissue
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
57
eye
43
nerve
37
embryo
22
vein
21
spleen
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
731
AMP
Genome assembly (visualization)
569
hg19
478
GRCh38
Lab
660
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
other post-translational modification
audit.ERROR.category!
inconsistent control
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
731 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
376
14
1
1
2
2
1
tissue
liver
118
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
hepatic stellate cell
1
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