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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
531
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
531
DNA binding
188
Transcription
27
DNA accessibility
6
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
other post-translational modification
Date released
313
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
30
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
653
bam
596
bigWig
448
fastq
420
bed narrowPeak
341
bigBed narrowPeak
169
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
hic
1
bed bed3
1
csv
1
vcf
Organism
759
Homo sapiens
Biosample type
398
cell line
360
tissue
1
primary cell
Organ
939
pancreas
787
liver
684
connective tissue
epithelium
491
adipose tissue
390
heart
353
kidney
286
brain
233
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
22
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
759
AMP
Genome assembly (visualization)
595
hg19
505
GRCh38
Lab
689
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
other post-translational modification
files.file_type!
hic
BIOSAMPLE
ASSAY
759 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
STARR-seq
Hi-C
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
376
14
1
1
2
2
1
1
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
hepatic stellate cell
1
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