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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
489
ChIP-seq
154
total RNA-seq
4
DNase-seq
3
small RNA-seq
2
ATAC-seq
1
WGBS
Assay category
489
DNA binding
157
Transcription
6
DNA accessibility
1
DNA methylation
Target of assay
324
transcription factor
99
control
82
recombinant protein
65
histone modification
64
histone
55
RNA binding protein
43
narrow histone mark
22
chromatin remodeller
21
broad histone mark
2
other context
other post-translational modification
Date released
312
November, 2017
193
May, 2020
53
November, 2018
48
December, 2017
26
August, 2017
7
July, 2019
6
October, 2019
5
January, 2019
1
February, 2021
1
June, 2019
1
March, 2020
Available data
653
bam
596
bigWig
448
fastq
420
bed narrowPeak
341
bigBed narrowPeak
169
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
653
Homo sapiens
Biosample type
364
cell line
288
tissue
1
primary cell
Organ
689
pancreas
679
liver
593
connective tissue
442
adipose tissue
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
21
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
653
AMP
Genome assembly (visualization)
559
hg19
505
GRCh38
Lab
653
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
653 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
ATAC-seq
WGBS
cell line
HepG2
357
5
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
2
1
primary cell
hepatic stellate cell
1
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