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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
482
ChIP-seq
184
total RNA-seq
22
ATAC-seq
4
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
DNase-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
482
DNA binding
188
Transcription
24
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
287
transcription factor
106
control
88
histone modification
87
histone
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
34
broad histone mark
17
chromatin remodeller
2
other context
other post-translational modification
Date released
313
November, 2017
194
May, 2020
54
August, 2017
November, 2018
48
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
600
bam
544
bigWig
395
fastq
369
bed narrowPeak
290
bigBed narrowPeak
169
tsv
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
5
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
708
Homo sapiens
Biosample type
354
tissue
353
cell line
1
primary cell
Organ
939
pancreas
736
liver
683
connective tissue
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
708
AMP
Genome assembly (visualization)
548
hg19
453
GRCh38
Lab
637
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
other post-translational modification
month_released!
November, 2018
BIOSAMPLE
ASSAY
708 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
DNase-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
141
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
331
14
1
2
2
2
1
primary cell
hepatic stellate cell
1
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