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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
160
total RNA-seq
6
DNase-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
164
Transcription
9
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
May, 2022
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
677
bam
585
bigWig
465
fastq
404
bed narrowPeak
358
bigBed narrowPeak
165
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
716
Homo sapiens
Biosample type
370
cell line
321
tissue
15
in vitro differentiated cells
10
primary cell
Organ
838
pancreas
716
liver
679
connective tissue
490
adipose tissue
438
epithelium
301
heart
286
brain
230
vasculature
224
blood vessel
224
kidney
159
bone element
139
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
716
AMP
Genome assembly (visualization)
587
hg19
528
GRCh38
Lab
716
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
intestine
month_released!
August, 2021
May, 2022
BIOSAMPLE
ASSAY
716 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
1
2
tissue
liver
145
147
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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