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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
612
ChIP-seq
244
total RNA-seq
68
ATAC-seq
10
DNase-seq
7
WGBS
7
single cell RNA-seq
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
whole genome sequencing assay
Assay category
612
DNA binding
254
Transcription
78
DNA accessibility
8
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
343
transcription factor
142
histone modification
141
histone
124
control
82
recombinant protein
71
narrow histone mark
70
broad histone mark
59
RNA binding protein
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
69
February, 2021
54
August, 2017
53
November, 2018
50
May, 2019
48
December, 2017
40
May, 2022
37
August, 2021
35
February, 2023
32
October, 2019
16
July, 2019
6
March, 2020
5
January, 2019
4
February, 2020
4
June, 2019
1
December, 2018
Available data
809
bam
725
bigWig
534
bed narrowPeak
450
fastq
405
bigBed narrowPeak
236
tsv
88
tagAlign
67
bed broadPeak
67
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
hic
3
tar
1
bed bed3
1
csv
1
vcf
Organism
963
Homo sapiens
Biosample type
494
tissue
467
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
963
AMP
Genome assembly (visualization)
734
hg19
677
GRCh38
Lab
892
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
intestine
epithelium
BIOSAMPLE
ASSAY
963 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
2
4
1
1
ascending aorta
16
2
1
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cell line
HepG2
378
14
1
1
2
2
2
1
smooth muscle cell of the coronary artery
6
52
8
primary cell
hepatic stellate cell
1
smooth muscle cell of the coronary artery
1
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