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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
375
DNA binding
5
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
82
recombinant protein
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
259
November, 2017
53
November, 2018
50
December, 2017
20
August, 2017
5
January, 2019
1
December, 2018
Available data
609
bigWig
580
bam
441
bed narrowPeak
388
fastq
358
bigBed narrowPeak
174
tsv
63
bed broadPeak
63
bigBed broadPeak
58
tagAlign
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
388
Homo sapiens
Biosample type
311
cell line
63
tissue
14
in vitro differentiated cells
Organ
441
pancreas
388
liver
240
epithelium
76
connective tissue
54
blood
54
bodily fluid
25
adipose tissue
20
embryo
16
brain
16
spleen
4
vasculature
2
blood vessel
2
musculature of body
Project
388
AMP
Genome assembly (visualization)
376
hg19
342
GRCh38
Lab
388
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
intestine
target.investigated_as!
control
BIOSAMPLE
ASSAY
388 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
304
5
1
1
tissue
liver
50
2
1
1
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
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