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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
159
total RNA-seq
3
small RNA-seq
1
WGBS
Assay category
360
DNA binding
162
Transcription
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
162
May, 2020
50
December, 2017
49
November, 2018
18
August, 2017
7
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
1
March, 2020
Available data
523
bam
522
bigWig
359
bed narrowPeak
339
fastq
320
bigBed narrowPeak
162
tsv
44
bed broadPeak
44
bigBed broadPeak
31
tagAlign
6
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
523
Homo sapiens
Biosample type
267
cell line
234
tissue
14
in vitro differentiated cells
8
primary cell
Organ
568
pancreas
552
connective tissue
523
liver
419
adipose tissue
243
epithelium
189
heart
183
brain
134
vasculature
132
blood vessel
79
artery
58
bone element
54
blood
54
bodily fluid
52
limb
51
kidney
29
embryo
28
nerve
20
musculature of body
14
spleen
10
vein
2
eye
1
pericardium
1
pituitary gland
Project
523
AMP
Genome assembly (visualization)
597
hg19
523
GRCh38
Lab
523
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
organ_slims!
ovary
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
523 results
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ChIP-seq
total RNA-seq
small RNA-seq
WGBS
cell line
HepG2
261
5
1
tissue
liver
75
147
1
right lobe of liver
7
2
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
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