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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
555
total RNA-seq
378
ChIP-seq
7
DNase-seq
6
ATAC-seq
6
small RNA-seq
3
WGBS
Assay category
561
Transcription
378
DNA binding
13
DNA accessibility
3
DNA methylation
Target of assay
303
transcription factor
81
recombinant protein
71
histone modification
70
histone
56
RNA binding protein
42
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
387
February, 2021
217
November, 2017
162
May, 2020
53
November, 2018
50
December, 2017
35
August, 2017
19
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
5
October, 2018
3
August, 2021
3
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
954
bam
950
bigWig
560
tsv
378
bed narrowPeak
366
fastq
335
bigBed narrowPeak
51
bed broadPeak
51
bigBed broadPeak
31
tagAlign
17
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
Organism
955
Homo sapiens
Biosample type
660
tissue
268
cell line
14
in vitro differentiated cells
13
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
955
AMP
Genome assembly (visualization)
1051
hg19
955
GRCh38
Lab
955
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
17
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
organ_slims!
ovary
BIOSAMPLE
ASSAY
955 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
382
1
2
liver
147
75
2
1
right lobe of liver
2
7
1
1
2
white adipose tissue
12
omental fat pad
4
3
2
1
1
+ See 3 more…
cell line
HepG2
5
261
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
3
1
mesenchymal stem cell of adipose
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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