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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
October, 2019
1
December, 2018
1
February, 2020
Available data
189
bigWig
173
tsv
169
bam
27
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
237
Homo sapiens
Biosample type
205
tissue
23
cell line
9
primary cell
Organ
723
pancreas
528
connective tissue
417
adipose tissue
384
epithelium
293
kidney
256
heart
237
liver
159
bone element
127
vasculature
124
blood vessel
104
artery
66
brain
57
musculature of body
46
limb
37
eye
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
5
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
237
AMP
Genome assembly (visualization)
194
hg19
169
GRCh38
Lab
184
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
organ_slims!
ovary
month_released!
October, 2019
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
237 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
166
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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