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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
174
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
176
Transcription
174
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
7
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
312
bam
287
bigWig
156
tsv
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
387
Homo sapiens
Biosample type
cell line
358
tissue
15
in vitro differentiated cells
14
primary cell
Organ
852
pancreas
681
connective tissue
488
adipose tissue
445
epithelium
387
liver
334
kidney
326
heart
282
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
94
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
387
AMP
Genome assembly (visualization)
292
hg19
260
GRCh38
Lab
347
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
skeleton
assay_title!
small RNA-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
387 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
right lobe of liver
3
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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