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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
365
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
365
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
285
transcription factor
81
recombinant protein
60
control
52
RNA binding protein
17
histone
17
histone modification
14
chromatin remodeller
9
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
305
November, 2017
43
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
354
fastq
353
bam
320
bigWig
296
bed narrowPeak
281
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
388
Homo sapiens
Biosample type
388
cell line
361
tissue
15
in vitro differentiated cells
14
primary cell
Organ
388
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
388
AMP
Genome assembly (visualization)
318
hg19
263
GRCh38
Lab
357
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
21
inconsistent control read length
2
inconsistent control run_type
organ_slims!
thymus
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
388 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
365
14
2
2
2
1
1
1
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