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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
151
ChIP-seq
21
ATAC-seq
4
WGBS
3
small RNA-seq
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
151
DNA binding
22
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
35
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
281
bam
258
bigWig
154
tsv
106
bed narrowPeak
76
fastq
70
tagAlign
42
bigBed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
354
Homo sapiens
Biosample type
355
cell line
354
tissue
15
in vitro differentiated cells
14
primary cell
Organ
546
connective tissue
498
pancreas
487
adipose tissue
354
liver
313
heart
299
kidney
263
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
354
AMP
Genome assembly (visualization)
261
hg19
231
GRCh38
Lab
314
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
thymus
month_released!
November, 2018
BIOSAMPLE
ASSAY
354 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
141
20
3
1
1
1
1
1
right lobe of liver
3
10
1
1
2
1
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