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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
175
total RNA-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
190
DNA binding
179
Transcription
28
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
94
histone modification
93
histone
57
control
52
narrow histone mark
41
broad histone mark
39
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
48
October, 2019
40
May, 2022
8
July, 2019
7
November, 2018
3
March, 2020
2
February, 2020
1
February, 2021
Available data
330
bam
296
bigWig
159
tsv
140
bed narrowPeak
83
fastq
75
bigBed narrowPeak
70
tagAlign
8
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
404
Homo sapiens
Biosample type
404
tissue
401
cell line
15
in vitro differentiated cells
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
404
AMP
Genome assembly (visualization)
299
hg19
269
GRCh38
Lab
364
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
thymus
BIOSAMPLE
ASSAY
404 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
145
167
20
2
3
1
1
1
1
1
tibial nerve
35
5
1
2
right lobe of liver
10
3
1
2
1
2
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