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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
313
DNA binding
162
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
254
transcription factor
81
recombinant protein
55
histone modification
54
histone
48
RNA binding protein
34
narrow histone mark
20
broad histone mark
17
chromatin remodeller
1
control
1
other context
1
other post-translational modification
Date released
173
November, 2017
162
May, 2020
50
December, 2017
49
November, 2018
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
August, 2021
1
February, 2021
1
March, 2020
Available data
528
bam
525
bigWig
364
bed narrowPeak
343
fastq
326
bigBed narrowPeak
162
tsv
49
bed broadPeak
bigBed broadPeak
28
tagAlign
8
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
479
Homo sapiens
Biosample type
235
tissue
224
cell line
14
in vitro differentiated cells
6
primary cell
Organ
628
pancreas
557
connective tissue
479
liver
422
adipose tissue
271
epithelium
236
heart
179
brain
176
blood vessel
176
vasculature
124
artery
66
bone element
63
kidney
60
limb
54
blood
54
bodily fluid
29
nerve
21
embryo
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
479
AMP
Genome assembly (visualization)
544
hg19
479
GRCh38
Lab
479
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
6
inconsistent control run_type
organ_slims!
thymus
month_released!
August, 2021
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
479 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
75
147
1
right lobe of liver
7
2
1
2
cell line
HepG2
217
5
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
Liver fetal (hepatocyte)
1
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