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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
432
ChIP-seq
155
total RNA-seq
21
ATAC-seq
5
DNase-seq
1
WGBS
Assay category
432
DNA binding
155
Transcription
26
DNA accessibility
1
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
52
November, 2018
50
December, 2017
20
May, 2022
18
August, 2017
17
August, 2021
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
March, 2020
Available data
674
bam
614
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
167
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
614
Homo sapiens
Biosample type
332
cell line
258
tissue
14
in vitro differentiated cells
10
primary cell
Organ
619
pancreas
614
liver
553
connective tissue
413
adipose tissue
294
epithelium
206
brain
203
heart
145
vasculature
140
blood vessel
124
kidney
90
limb
82
artery
63
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pituitary gland
Project
614
AMP
Genome assembly (visualization)
609
hg19
521
GRCh38
Lab
580
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
thymus
month_released!
July, 2019
BIOSAMPLE
ASSAY
614 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
326
5
1
tissue
liver
82
145
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
hepatic stellate cell
1
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