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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
33
total RNA-seq
8
WGBS
5
pCHi-C
4
ATAC-seq
3
Hi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
RNA microarray
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
174
DNA binding
34
Transcription
10
DNA methylation
5
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
119
control
50
histone
50
histone modification
32
broad histone mark
18
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
76
August, 2017
47
November, 2017
24
May, 2020
20
May, 2022
19
August, 2021
18
October, 2018
13
December, 2017
3
February, 2020
3
February, 2021
3
March, 2020
2
July, 2019
1
August, 2018
1
December, 2018
1
February, 2023
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2019
Available data
1123
bam
bigWig
575
tsv
509
fastq
454
bed narrowPeak
368
bigBed narrowPeak
94
tagAlign
66
bed broadPeak
65
bigBed broadPeak
19
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
bedpe bed3+
3
tar
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
234
Homo sapiens
Biosample type
161
tissue
69
cell line
3
primary cell
2
in vitro differentiated cells
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
235
AMP
Genome assembly (visualization)
11
hg19
5
GRCh38
Lab
198
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
235 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
STARR-seq
DNase-seq
RNA microarray
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
right lobe of liver
3
1
1
1
+ See 2 more…
cell line
HepG2
52
9
2
1
2
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
white fat cell
1
See all biosamples
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