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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
66
total RNA-seq
9
ATAC-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
WGBS
1
whole genome sequencing assay
Assay category
384
DNA binding
66
Transcription
9
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
301
transcription factor
82
recombinant protein
62
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
68
February, 2021
46
November, 2018
31
August, 2021
5
January, 2019
1
December, 2018
1
May, 2020
Available data
432
bam
388
bigWig
367
fastq
320
bed narrowPeak
293
bigBed narrowPeak
67
tsv
58
bed broadPeak
58
bigBed broadPeak
18
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
467
Homo sapiens
Biosample type
494
tissue
467
cell line
44
primary cell
15
in vitro differentiated cells
Organ
401
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
467
AMP
Genome assembly (visualization)
394
hg19
332
GRCh38
Lab
436
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
467 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
STARR-seq
pCHi-C
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
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