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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
251
total RNA-seq
84
RNA microarray
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
255
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
144
February, 2021
63
December, 2017
52
August, 2017
50
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
February, 2023
3
March, 2020
1
December, 2018
1
February, 2020
1
May, 2021
Available data
731
bam
654
bigWig
461
fastq
413
bed narrowPeak
352
bigBed narrowPeak
232
tsv
88
txt
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
909
Homo sapiens
Biosample type
482
tissue
400
cell line
15
in vitro differentiated cells
12
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
908
AMP
1
T1D
Genome assembly (visualization)
655
hg19
581
GRCh38
Lab
857
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
909 results
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ChIP-seq
total RNA-seq
RNA microarray
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
3
1
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
10
3
1
2
acetabular part of hip bone
1
+ See 3 more…
cell line
HepG2
378
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
megakaryocyte
1
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