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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
251
total RNA-seq
84
RNA microarray
35
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
255
Transcription
41
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
153
February, 2021
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
8
February, 2023
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
1
May, 2021
Available data
248
bigWig
237
bam
232
tsv
88
txt
36
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed bed3
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
398
Homo sapiens
Biosample type
364
tissue
23
cell line
11
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
397
AMP
1
T1D
Genome assembly (visualization)
266
hg19
237
GRCh38
Lab
344
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
398 results
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total RNA-seq
RNA microarray
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
3
1
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
3
1
2
1
2
acetabular part of hip bone
1
1
+ See 11 more…
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
megakaryocyte
1
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