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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
29
total RNA-seq
5
WGBS
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
123
DNA binding
30
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
4
November, 2018
1
December, 2018
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
1
May, 2021
Available data
96
bam
75
fastq
44
tagAlign
11
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
166
Homo sapiens
Biosample type
92
tissue
71
cell line
2
primary cell
1
in vitro differentiated cells
Organ
287
pancreas
225
kidney
213
epithelium
202
heart
165
liver
110
brain
93
connective tissue
89
bone element
68
blood vessel
68
vasculature
63
adipose tissue
46
artery
26
eye
23
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
11
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
165
AMP
1
T1D
Genome assembly (visualization)
hg19
531
GRCh38
Lab
129
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
month_released!
February, 2020
assembly!
hg19
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
total RNA-seq
WGBS
pCHi-C
STARR-seq
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
cell line
HepG2
56
9
1
1
2
1
1
primary cell
hepatocyte
1
megakaryocyte
1
in vitro differentiated cells
hepatocyte
1
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