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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
367
ChIP-seq
13
DNase-seq
5
ATAC-seq
Assay category
367
DNA binding
18
DNA accessibility
Target of assay
320
transcription factor
81
recombinant protein
61
RNA binding protein
44
histone
44
histone modification
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
52
November, 2018
50
December, 2017
16
June, 2019
9
August, 2017
5
October, 2018
3
October, 2019
1
November, 2020
Available data
1273
bam
1191
bigWig
652
tsv
566
fastq
515
bed narrowPeak
385
bigBed narrowPeak
108
tagAlign
72
bed broadPeak
71
bigBed broadPeak
39
bed bed3+
7
bed bed3
6
bed bedMethyl
6
bigBed bedMethyl
4
bed bedgraph
3
bedpe bed3+
3
tar
2
hdf5
2
hic
1
csv
1
vcf
Organism
385
Homo sapiens
Biosample type
293
cell line
59
tissue
17
in vitro differentiated cells
16
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
385
AMP
Genome assembly (visualization)
380
hg19
350
GRCh38
Lab
385
AMP-T2D consortium
Audit category:
27
inconsistent control
10
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
385 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
tissue
liver
38
2
right lobe of liver
7
1
1
omental fat pad
3
2
subcutaneous adipose tissue
2
1
adipose tissue
1
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
hepatocyte
1
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