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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
9
total RNA-seq
2
ATAC-seq
2
Capture-C
2
STARR-seq
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
22
DNA binding
9
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
458
February, 2021
315
November, 2017
194
May, 2020
179
August, 2017
63
December, 2017
54
November, 2018
40
August, 2021
40
May, 2022
28
July, 2019
23
October, 2018
19
June, 2019
14
February, 2023
11
October, 2019
6
November, 2020
5
December, 2019
5
January, 2019
5
March, 2020
3
February, 2020
2
April, 2018
2
July, 2018
2
May, 2021
1
August, 2018
1
December, 2018
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
Available data
19
bed narrowPeak
19
bigWig
9
tsv
5
bed bed3+
4
bam
4
tagAlign
1
bedpe bed3+
1
hic
1
vcf
Organism
39
Homo sapiens
Biosample type
31
cell line
4
in vitro differentiated cells
4
primary cell
1
tissue
Organ
130
kidney
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
40
AMP
Genome assembly (visualization)
22
hg19
3
GRCh38
Lab
31
Bing Ren, UCSD
5
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
tissue
subcutaneous adipose tissue
1
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