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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
17
histone
17
histone modification
15
transcription factor
11
chromatin remodeller
11
narrow histone mark
6
RNA binding protein
6
broad histone mark
1
recombinant protein
Date released
21
November, 2017
5
August, 2017
5
November, 2018
1
December, 2017
Available data
32
bam
32
bigWig
32
fastq
30
bed narrowPeak
25
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
Organism
32
Homo sapiens
Biosample type
26
cell line
4
primary cell
1
in vitro differentiated cells
1
tissue
Organ
27
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
32
AMP
Genome assembly (visualization)
32
hg19
28
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
cell line
HepG2
26
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
in vitro differentiated cells
Hepatic endoderm
1
tissue
liver
1
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