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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
94
single cell RNA-seq
35
ATAC-seq
33
total RNA-seq
13
WGBS
5
pCHi-C
4
DNase-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
143
DNA binding
127
Transcription
39
DNA accessibility
13
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
114
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
109
August, 2021
49
November, 2017
36
February, 2023
34
August, 2017
24
May, 2020
20
May, 2022
13
December, 2017
10
April, 2019
9
July, 2019
6
May, 2019
5
June, 2019
4
February, 2020
4
March, 2020
4
November, 2018
3
February, 2021
1
December, 2018
Available data
125
bam
110
tsv
75
fastq
46
tagAlign
42
bed narrowPeak
14
bigWig
7
bed bedMethyl
7
bigBed bedMethyl
7
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
csv
1
vcf
Organism
331
Homo sapiens
Biosample type
253
tissue
73
cell line
4
primary cell
1
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
331
AMP
Genome assembly (visualization)
hg19
757
GRCh38
Lab
295
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
331 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
62
1
20
3
1
coronary artery
2
35
1
heart left ventricle
6
18
4
1
heart right ventricle
2
17
2
1
right cardiac atrium
1
18
1
1
+ See 12 more…
cell line
HepG2
56
9
1
1
2
1
1
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
2
1
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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