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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
29
total RNA-seq
20
ATAC-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
58
DNA binding
29
Transcription
20
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
38
histone
38
histone modification
21
broad histone mark
17
narrow histone mark
16
transcription factor
6
RNA binding protein
4
control
Date released
40
May, 2022
40
May, 2024
31
August, 2021
Available data
74
bed narrowPeak
74
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
111
Homo sapiens
Biosample type
80
tissue
31
cell line
Organ
219
pancreas
191
kidney
158
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
111
AMP
Genome assembly (visualization)
40
GRCh38
35
hg19
Lab
AMP-T2D consortium
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
31
Bing Ren, UCSD
files.file_type!
bed broadPeak
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
left cardiac atrium
40
liver
20
20
cell line
HepG2
18
9
2
1
1
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