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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
64
DNA binding
Target of assay
350
transcription factor
165
histone modification
164
histone
128
control
85
narrow histone mark
82
recombinant protein
79
broad histone mark
64
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
19
November, 2018
4
December, 2017
3
April, 2019
2
May, 2019
1
August, 2021
1
June, 2019
Available data
63
bam
62
bed narrowPeak
62
bigWig
61
bigBed narrowPeak
57
fastq
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
64
Homo sapiens
Biosample type
54
cell line
7
tissue
2
in vitro differentiated cells
1
primary cell
Organ
58
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
64
AMP
Genome assembly (visualization)
61
hg19
57
GRCh38
Lab
63
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
cell line
HepG2
54
tissue
heart left ventricle
3
coronary artery
1
liver
1
right atrium auricular region
1
right lobe of liver
1
in vitro differentiated cells
hepatocyte
2
primary cell
cardiac fibroblast
1
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