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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
5
pCHi-C
Hi-C
4
WGBS
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
30
August, 2021
28
August, 2017
3
March, 2020
2
February, 2021
2
July, 2019
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
621
bigWig
464
fastq
441
bed narrowPeak
358
bigBed narrowPeak
176
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
108
Homo sapiens
Biosample type
74
tissue
33
cell line
1
primary cell
Organ
248
pancreas
209
kidney
199
epithelium
179
heart
106
liver
93
bone element
90
connective tissue
54
eye
49
adipose tissue
46
vasculature
45
blood vessel
40
brain
39
artery
33
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
37
hg19
Lab
40
Karen Mohlke, UNC
38
AMP-T2D consortium
30
Bing Ren, UCSD
assay_title!
Hi-C
files.file_type!
bam
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
WGBS
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
3
1
1
right lobe of liver
1
1
1
sigmoid colon
1
small intestine
1
cell line
HepG2
19
9
2
2
1
primary cell
hepatocyte
1
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