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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
5
pCHi-C
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
214
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
74
November, 2017
50
August, 2017
40
May, 2022
30
December, 2017
23
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
March, 2020
4
November, 2018
3
February, 2021
2
June, 2019
1
February, 2020
Available data
355
bam
288
bigWig
176
tsv
137
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
csv
1
vcf
Organism
451
Homo sapiens
Biosample type
323
tissue
102
cell line
13
in vitro differentiated cells
13
primary cell
Organ
918
pancreas
643
connective tissue
507
epithelium
474
adipose tissue
449
liver
373
heart
343
kidney
280
brain
222
vasculature
217
blood vessel
159
bone element
136
artery
118
limb
90
musculature of body
60
eye
43
nerve
34
embryo
20
lung
20
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
451
AMP
Genome assembly (visualization)
293
hg19
245
GRCh38
Lab
392
AMP-T2D consortium
40
Karen Mohlke, UNC
19
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
assay_title!
Hi-C
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
451 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
20
2
3
1
1
1
1
right lobe of liver
8
3
1
2
1
2
sigmoid colon
1
small intestine
1
cell line
HepG2
81
14
1
1
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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