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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
3
DNA accessibility
3
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
control
Date released
5
December, 2019
3
August, 2021
2
July, 2019
2
June, 2019
1
October, 2019
Available data
11
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
5
tsv
3
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
13
Homo sapiens
Biosample type
341
cell line
317
tissue
14
in vitro differentiated cells
13
primary cell
Organ
385
epithelium
334
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
0
intestine
Project
13
AMP
Genome assembly (visualization)
13
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
13 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
3
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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