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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
5
DNase-seq
Assay category
50
DNA binding
5
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
50
November, 2017
3
November, 2018
2
June, 2019
Available data
652
bam
592
bigWig
440
fastq
412
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
55
Homo sapiens
Biosample type
50
cell line
3
tissue
2
primary cell
Organ
78
kidney
55
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
11
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
0
lymph node
Project
55
AMP
Genome assembly (visualization)
55
hg19
42
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
DNase-seq
cell line
HepG2
50
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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