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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
Assay category
346
DNA binding
Target of assay
346
transcription factor
174
histone modification
173
histone
129
control
87
broad histone mark
86
narrow histone mark
82
recombinant protein
62
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
242
November, 2017
49
November, 2018
33
December, 2017
11
August, 2021
4
August, 2017
4
February, 2021
3
May, 2019
Available data
341
bigWig
337
bed narrowPeak
334
bam
328
fastq
318
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
4
tagAlign
3
tar
2
bed bed3+
Organism
346
Homo sapiens
Biosample type
301
cell line
42
tissue
2
in vitro differentiated cells
1
primary cell
Organ
338
liver
51
blood
51
bodily fluid
40
connective tissue
19
pancreas
17
adipose tissue
17
heart
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
1
eye
0
lymph node
Project
346
AMP
Genome assembly (visualization)
337
hg19
294
GRCh38
Lab
335
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
346 results
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Clear Filters
ChIP-seq
cell line
HepG2
297
smooth muscle cell of the coronary artery
4
tissue
liver
37
right lobe of liver
2
ascending aorta
1
coronary artery
1
thoracic aorta
1
in vitro differentiated cells
hepatocyte
2
primary cell
brain microvascular endothelial cell
1
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