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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
139
ChIP-seq
36
DNase-seq
23
ATAC-seq
9
Hi-C
5
small RNA-seq
4
RRBS
4
WGBS
4
pCHi-C
2
STARR-seq
2
single cell RNA-seq
1
snATAC-seq
1
whole genome sequencing assay
Assay category
197
Transcription
139
DNA binding
60
DNA accessibility
9
3D chromatin structure
8
DNA methylation
1
DNA sequencing
Target of assay
91
histone
91
histone modification
54
narrow histone mark
37
broad histone mark
37
control
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
50
August, 2017
45
June, 2019
42
May, 2022
35
August, 2021
20
July, 2019
8
March, 2020
7
May, 2019
7
October, 2019
5
December, 2019
3
February, 2020
3
February, 2021
1
January, 2018
Available data
738
bam
690
bigWig
501
bed narrowPeak
fastq
405
bigBed narrowPeak
183
tsv
109
bed broadPeak
101
tagAlign
96
bigBed broadPeak
47
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
tar
1
bed bed3
1
csv
1
hdf5
1
txt
1
vcf
Organism
420
Homo sapiens
Biosample type
358
tissue
34
cell line
28
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
354
kidney
353
heart
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
420
AMP
Genome assembly (visualization)
306
hg19
241
GRCh38
Lab
349
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
1
audit script error
1
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
420 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
small RNA-seq
RRBS
WGBS
pCHi-C
STARR-seq
single cell RNA-seq
snATAC-seq
whole genome sequencing assay
tissue
liver
167
78
20
1
1
2
1
1
skeletal muscle tissue
1
22
1
1
2
1
1
muscle of leg
7
13
1
muscle of arm
17
right lobe of liver
3
1
2
1
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cell line
HepG2
9
18
1
1
2
2
1
primary cell
hepatocyte
5
4
1
1
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
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