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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
568
ChIP-seq
189
total RNA-seq
23
ATAC-seq
7
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
568
DNA binding
193
Transcription
30
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
117
control
112
histone modification
111
histone
82
recombinant protein
61
narrow histone mark
56
RNA binding protein
50
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
48
October, 2019
40
May, 2022
31
August, 2021
8
July, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
February, 2020
1
December, 2018
1
June, 2019
Available data
697
bam
629
bigWig
450
fastq
449
bed narrowPeak
369
bigBed narrowPeak
174
tsv
82
tagAlign
64
bed broadPeak
64
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
806
Homo sapiens
Biosample type
404
tissue
401
cell line
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
806
AMP
Genome assembly (visualization)
630
hg19
538
GRCh38
Lab
735
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
806 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
1
tibial nerve
35
5
1
2
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
378
14
1
1
2
2
2
1
primary cell
hepatic stellate cell
1
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