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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
total RNA-seq
74
single cell RNA-seq
6
WGBS
5
small RNA-seq
3
pCHi-C
2
ATAC-seq
Assay category
580
Transcription
6
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
144
May, 2020
89
August, 2017
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
11
July, 2019
10
August, 2021
8
March, 2020
5
December, 2019
5
January, 2019
3
August, 2018
2
February, 2020
2
October, 2018
1
June, 2018
1
October, 2019
Available data
1370
bam
1245
bigWig
936
fastq
655
bed narrowPeak
591
tsv
449
bigBed narrowPeak
105
tagAlign
84
bed broadPeak
80
zippedFastqFolder
70
bigBed broadPeak
42
bed bed3+
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
6
txt
3
cool
3
tar
2
hdf5
1
bed bed3
1
bedpe
1
csv
1
vcf
Organism
591
Homo sapiens
Biosample type
429
tissue
113
primary cell
49
cell line
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
583
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
570
hg19
568
GRCh38
Lab
575
AMP-T2D consortium
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
Audit category:
39
inconsistent ontology term
BIOSAMPLE
ASSAY
591 results
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total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
pCHi-C
ATAC-seq
tissue
islet of Langerhans
267
1
liver
147
1
1
body of pancreas
3
2
right lobe of liver
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
HepG2
14
1
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