Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
20
ATAC-seq
18
ChIP-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
20
DNA accessibility
18
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
22
August, 2021
20
May, 2022
Available data
34
bed narrowPeak
34
bigWig
1
bedpe bed3+
1
hic
1
vcf
Organism
42
Homo sapiens
Biosample type
22
cell line
20
tissue
Organ
155
pancreas
142
kidney
105
epithelium
42
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
0
skin of body
Project
42
AMP
Genome assembly (visualization)
35
hg19
Lab
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
assay_title!
total RNA-seq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
42 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
2
1
1
tissue
liver
20
Download