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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
533
ChIP-seq
total RNA-seq
23
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
533
DNA binding
28
DNA accessibility
6
DNA methylation
4
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
54
August, 2017
53
November, 2018
51
May, 2020
48
December, 2017
22
August, 2021
20
May, 2022
6
October, 2019
4
July, 2019
3
February, 2021
2
March, 2020
1
December, 2018
1
June, 2019
Available data
501
bam
445
fastq
444
bigWig
422
bed narrowPeak
343
bigBed narrowPeak
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
5
tsv
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
580
Homo sapiens
Biosample type
387
cell line
192
tissue
1
primary cell
Organ
602
liver
543
pancreas
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
580
AMP
Genome assembly (visualization)
445
hg19
353
GRCh38
Lab
538
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
580 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
2
1
tissue
liver
145
20
2
3
1
1
1
1
1
right lobe of liver
10
1
2
1
2
islet of Langerhans
1
primary cell
hepatic stellate cell
1
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